PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0094s0046.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 159aa    MW: 17250.8 Da    PI: 5.2152
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0094s0046.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.63.4e-11291001487
                          T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 
                          +r+++  kf++++g++   +  +tl+ ++  +W+v +  rk++++   +++kGW eF ++  L   Df++F++d  
  Kalax.0094s0046.3.p  29 RRVIIDCKFVTRFGNQV--PDIVTLQVPNEAKWRVGV--RKNDDGgvWLIGKGWAEFINSLSLGYADFLMFEYDAI 100
                          57889999999997774..447***************..5555555599***********************9864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.68616112IPR003340B3 DNA binding domain
SMARTSM010190.001720112IPR003340B3 DNA binding domain
CDDcd100171.51E-1128106No hitNo description
Gene3DG3DSA:2.40.330.104.7E-1329120IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1329119IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-82999IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MGFSYGLAMG LRLIQPTELN FTTLCAAGRR VIIDCKFVTR FGNQVPDIVT LQVPNEAKWR  60
VGVRKNDDGG VWLIGKGWAE FINSLSLGYA DFLMFEYDAI SAAFHVVAMG MSASEIKYPA  120
LATDDDPDDD DVVLLSSRSK KGPTPSASNL PKESKAKI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-13B3 family protein