![]() |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0094s0046.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 159aa MW: 17250.8 Da PI: 5.2152 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.6 | 3.4e-11 | 29 | 100 | 14 | 87 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 +r+++ kf++++g++ + +tl+ ++ +W+v + rk++++ +++kGW eF ++ L Df++F++d Kalax.0094s0046.3.p 29 RRVIIDCKFVTRFGNQV--PDIVTLQVPNEAKWRVGV--RKNDDGgvWLIGKGWAEFINSLSLGYADFLMFEYDAI 100 57889999999997774..447***************..5555555599***********************9864 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.686 | 16 | 112 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0017 | 20 | 112 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.51E-11 | 28 | 106 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.7E-13 | 29 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-13 | 29 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.5E-8 | 29 | 99 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 159 aa Download sequence Send to blast |
MGFSYGLAMG LRLIQPTELN FTTLCAAGRR VIIDCKFVTR FGNQVPDIVT LQVPNEAKWR 60 VGVRKNDDGG VWLIGKGWAE FINSLSLGYA DFLMFEYDAI SAAFHVVAMG MSASEIKYPA 120 LATDDDPDDD DVVLLSSRSK KGPTPSASNL PKESKAKI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-13 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0094s0046.3.p |